个人简介工作经历： 2009.05- 南京大学生命科学学院，博士研究生导师 2007.12- 南京大学生命科学学院，教授 2006.09-2007.12 南京大学生命科学学院，副教授 2002.12-2006.04 美国康奈尔大学，博士后(导师：Dr. Li Li) 2001.09-2002.11 德国马普化学生态所，博士后(导师：Dr. Jonathan Gershenzon院士) 1998.12-2001.09 中科院上海植物生理生态研究所，博士后(导师：陈晓亚院士) 1998.02-1998.10 美国康涅狄克大学，访问学者(导师：Dr. Charles Yarish) 1997.02-1998.12 中科院海洋所，博士后(导师：曾呈奎院士、费修绠研究员) 学习经历： 1994.09-1997.01 南京大学生物学系，植物学专业，博士研究生，导师：刘志礼教授 1991.07-1994.09 南京大学生物学系，植物学专业，硕士研究生，导师：陈晓亚副教授 1987.09-1991.07 南京大学生物学系，植物学专业，本科生 学术兼职： Plant Physiology: Monitoring Editor （2026-） 中国海洋湖沼学会藻类学分会: 副理事长 (2007-2024) 中国植物生理与植物分子生物学学会：理事(2014-2024) 江苏省植物生理学会：副理事长(2015-2024) American Association for the Advancement of Science: 会员 (2003-) American Society of Plant Biologists: 会员 (2003-) 审稿人： Nature Plants, Nature Communications, Plant Cell, Molecular Plant, Plant Physiology, Plant Journal, Plant Biotechnology Journal, Metabolic Engineering, New Phytologist, Trends in Plant Science, Plant Cell Physiology, Plant Cell & Environment, Journal of Integrative Plant Biology等 研究方向本实验室利用分子生物学手段研究与植物叶綠体发育相关的代谢过程及其调控机制。 牻牛儿基牻牛儿基二磷酸(GGPP)是植物萜类代谢途径中的一个关键分支点。植物以GGPP为底物，合成大约2万种天然产物，其中包括激素(赤霉素、脱落酸、独脚金内酯)、色素(类胡萝卜素和叶绿素的植基侧链)、维生素(来自胡萝卜素的维生素A和维生素E的植基侧链)，以及参与植物对病原微生物防御机制的二萜植保素。这些代谢分支共同竞争GGPP，构成了牵一发而动全身的复杂网络。GGPP的合成及其在下游分支间的分配机制影响了植物的生长发育和逆境适应能力，也影响着农产品的营养品质和风味特色，以及园艺植物的观赏价值。
本实验室近年来围绕这一核心问题开展了一系列研究工作，相关成果发表于PNAS (2017)、Plant Cell (2019, 2023)、Molecular Plant (2021)、Plant Biotechnology Journal (2021)、Plant Journal (2024)、Plant Physiology (2025)等重要学术刊物。主要进展包括： 1. 解析了水稻中GGPP保障叶绿素代谢的调控机制(Zhou et al., 2017, PNAS)[南京大学优秀博士学位论文]；
2. 解析了植物GPP合酶的起源与功能分化，并发现了决定GGPPS/GPPS产物链长的分子机制(Song et al., 2023, Plant Cell)[南京大学优秀博士学位论文]。
在蓝细菌和藻类植物中，GGPPS通常只能专一地合成GGPP。随着在苔藓植物中的基因家族扩张，一些GGPPS逐渐产生了合成GPP的能力，而这一能力在蕨类植物中得到发展，并最终形成裸子植物中功能专一的GPPS。与此同时，在苔藓植物中还出现了由GGPPS向无催化功能的小亚基蛋白的分化。该分化首先在蕨类和裸子植物中形成了对GGPPS酶活具有促进能力的II类小亚基(SSUII)，并最终在被子植物中产生了能够改变GGPPS用于合成GPP的I类小亚基(SSUI)。利用GGPPS-SSUI组合取代单一的GPPS来产生GPP，在保障GGPPS功能(植物的生长和发育)的前提下，赋予了被子植物萜类代谢更大的自由度。
3. 解析了锌指蛋白ORANGE在子叶中通过转录因子TCP14对叶绿素合成和叶绿体发育的抑制作用(Sun et al., 2019, Plant Cell)；
4. 建立了植物基因组无缺组装的新技术路线(Li et al., 2021. Molecular Plant)[南京大学优秀博士学位论文][江苏省自然科学百篇优秀学术成果论文(2024)]
5. 解析了辣椒果实中类胡萝卜素合成的部分代谢流调控机制(Wang et al., 2018, 2019, J Agric Food Chem)；
6. 以紫菜为主要材料，系统研究了红藻的类胡萝卜素代谢途径，初步揭示了这一重要代谢途径在植物中的早期演化(Yang et al., 2014, J Intergr Plant Biol; 2015, J Appl Phycol; Cao et al., 2017, Mar Drugs; Deng et al., 2020, J Agric Food Chem; Lyu et al., 2015 Algal Res; Lyu et al., Aquaculture)。
7. 建立了基于蓝细菌的类胡萝卜素代谢酶活鉴定系统和合成生物学光驱动底盘(Cao et al., 2020, Plant Biotechnol J)。
学术兼职工作经历科研成果研究论文(*为通讯作者)： 2026. 1. Lyu D, Liu J, Zheng L, Ge Z, Hu C, Yang L-E, Lu S*, Li K*, Deng Y*. 2026. Transcriptomic atlas demonstrates the diurnal partitioning of physiological activities of the intertidal red algal seaweed Neoporphyra haitanensis. Aquaculture 612: 743122. [link] 2025. 1. Lyu D, Wang Z, Yang L-E, Hu C, Lu S*, Deng Y*. 2025. Diurnal rhythm of carotenoid metabolism in the intertidal red algal seaweed Neoporphyra haitanensis. Algal Research 85: 103846. [link] 2. Li F , Xu M-B, Pan L-H, Li J, Lan C-B, Li Z, Lu S, Lai J-X*, Li P-F*. 2025. Ammonifying and phosphorus-solubilizing function of Aliikangiella maris sp. nov. isolated from Phaeocystis globosa blooms and algal-bacterial interaction. Frontiers in Microbiology 16: 1516993. [link] 3. Zheng H, Torres-Montilla S, Huang X, Rodríguez-Concepción M*, Lu S*. 2025. STAY-GREEN overexpression in dark-incubated leaves promotes the formation of transitional chromoplast-like plastids. Plant Physiology 198: kiaf242 [link] 4. Ge Z, Jing Y, Zhu J, Yang L-E, Lu S*, Deng Y*. 2025. APE1 localizes to chloroplast stromules and interacts with ATI1 in Arabidopsis. Plant Signaling & Behavior 29: 2511830. [link] 5. Zhang Y, Li K, Feng Y, Li Z, Hu Y, Yousefzadeh H, Nasiri M, Adroit B, Li P, Lu S, Li P, Liu H, Peng Y, Xu C*, Qiu Y*, Wang Z*. 2025. Evolutionary legacy of the “living fossil” genus Parrotia (Hamamelidaceae): genomic insights into species divergence and polygenic adaptation. Plant Journal 123, e70367. [link] 6. Zhang H, Lyu D, Zhang Y, Wang W, Zhao R, Lü P, Zhao W, Zhou Z*, Lu S*. 2025. Classification of heterotic groups and prediction of heterosis in Sorghum based on whole-genome resequencing. International Journal of Molecular Sciences 26: 7950. [link] 7. Hui Y, Lyu D, Huang N, Luo S, Zheng L, Zheng L, Hu C, Yang L-E, Lu S*, Deng Y*. 2025. Genomic analysis of carotenoid and vitamin E biosynthetic pathways in the extremophilic red alga Cyanidioschyzon merolae. Antioxidants 14: 1303. [link] 8. Lu J, Zhang R, Lu S, Xue Z*. 2025. Unveiling the inequivalent biochemical functions of OsSMO2-1 and OsSMO2-2 in rice phytosterol biosynthesis using a customized sterol standards mixture. Plant Journal 124: e70559. [link] 2024. 1. Zhu S, Yang H, Bin S, Wang M, You T, Li X, Tian L, Grossman A, Lu S*, Yang W*. 2024, GreenCut protein LPB1 is required for SQDG accumulation and optimal photosynthetic electron transfer from QA− to QB in Chlamydomonas reinhardtii. Algal Research 79: 103456. [link] 2. Yarish C*, Pang S, Lu S, Brawley SH. 2024. Xiugeng Fei (1932-2022). Journal of Applied Phycology 36: 1073-1080 (Editorial Notes). [link] 3. Wang Q, Wang L, Song S, Zhao Y-N, Gu H-H, Zhu Z*, Wang J*, Lu S*. 2024. ORANGE interplays with TCP7 to regulate endoreduplication and leaf size. Plant Journal 120: 473-490. [link] 2023 1. Song S, Jin R, Chen Y, He S, Li K, Tang Q, Wang Q, Wang L, Kong M, Dudareva N*, Smith BJ*, Zhou F*, Lu S*. 2023. The functional evolution of architecturally different plant geranyl diphosphate synthases from geranylgeranyl diphosphate synthase. Plant Cell 35: 2293-2315. [link] 2. Sun TH, Wang P, Rao SM, Zhou XS, Wrightstone E, Lu S, Yuan H, Yang Y, Fish H, Thannhauser T, Liu JP, Mazourek M, Grimm B, Li L*. 2023. Co-chaperoning of chlorophyll and carotenoid biosynthesis by ORANGE family proteins in plants. Molecular Plant 16: 1048-1065. [link] 3. Liang H, Chen H, Liu X, Wang Z, Li P, Lu S*. 2023. Heterologous production in the Synechocystis chassis suggests the biosynthetic pathway of astaxanthin in cyanobacteria. Antioxidants 12: 1826. [link] 2022 1. Song S, Song S-Y, Nian P, Lv D, Jing Y, Lu S*, Wang, Q*, Zhou, F*. 2022. Transcriptomic analysis suggests a coordinated regulation of carotenoid metabolism in ripening chili pepper (Capsicum annuum var. conoides) fruits. Antioxidants 11: 2245. [link] 2. Zhu S, Bin S, Wang W, Lu S*, Yang W*. 2022. Exogenous arachidonic acid affects fucoxanthin biosynthesis and photoprotection in Phaeodactylum tricornutum. Marine Drugs 20: 644. [link] 3. Dong S, Jing X, Lin S, Lu K, Li W, Lu J, Li M, Gao S, Lu S, Zhou S, Chen C, Xing B, Mao L*. 2022. Root hair apex is the key site for symplastic delivery of graphene into plants. Environmental Science & Technology 56: 12179-12189. [link] 4. Tang Q, Zhao Y-N, Luo S, Lu S*. 2022. AKR2A is involved in the flowering process of Arabidopsis thaliana. Plant Signaling & Behavior 17: e2100685. [link] 5. Fang L*, Zhang Z, Zhao T, Zhou N, Mei H, Huang X, Wang F, Si Z, Han Z, Lu S, Hu Y, GuanX, Zhang T*. 2022. Retrieving a disrupted gene encoding phospholipase A for fiber enhancement in allotetraploid cultivated cotton. Plant Biotechnology Journal 20: 1770-1785. [link] 6. Wang Q, Wang G-L, Song S-Y, Zhao Y-N, Lu S*, Zhou F*. 2022. ORANGE negatively regulates flowering time in Arabidopsis thaliana. Journal of Plant Physiology 274: 153719. [link] 7. Ali F, Wang Q, Fazal Q, Wang L-J, Song S, Kong M-J, Mahmood T*, Lu S*. 2022. The DnaJ-like zinc finger protein ORANGE promotes proline biosynthesis in drought-stressed Arabidopsis seedlings. International Journal of Molecular Sciences 23: 3907. [link] 8. Zhao W, Hu C-M, Zhou W, Deng Y-Y, Xu G-P, Tian C-C, Lu Q-Q, Lu S, Zhang M-R, Yang L-E*. 2022. Carotenoids participate in adaptation/resistance of daily desiccation in the intertidal red alga Neopyropia yezoensis (Bangiales, Rhodophyta). Algal Research 61: 102602. [link] 2021 1. Skotnicová P, Staleva-Musto H, Kuznetsova V, Bína D, Konert MM, Lu S, Polívka T, Sobotka R*. 2021. Plant LHC-like proteins show robust folding and static non-photochemical quenching. Nature Communications 12: 6890. [link] 2. Wang L, Huang X-Q, Li K, Song S-Y, Jing Y-H, Lu S*. 2021. Screening and identification of candidate GUN1-interacting proteins in Arabidopsis thaliana. International Journal of Molecular Sciences 22: 11364. [link] 3. Chen W-C, Wang Q, Cao T-J, Lu S*. 2021. UBC19 is a new interacting protein of ORANGE for its nuclear localization in Arabidopsis thaliana. Plant Signaling & Behavior 16: e1964847. [link] 4. Li K, Jiang W, Hui Y, Kong M, Feng LY, Gao LZ*, Li P*, Lu S*. 2021. Gapless indica rice genome reveals synergistic contributions of active transposable elements and segmental duplications to rice genome evolution. Molecular Plant 14: 1745-1756. [link] 5. Cheng L, Huang N, Jiang S, Li K, Zhuang Z, Wang Q, Lu S*. 2021. Cloning and functional characterization of two carotenoid cleavage dioxygenases for ionone biosynthesis in chili pepper (Capsicum annuum) fruits. Scientia Horticulturae 288: 110368. [link] 6. Huang X-Q, Wang L-J, Kong M-J, Huang N, Liu X-Y, Liang H-Y, Zhang J-X, Lu S*. 2021. At3g53630 encodes a GUN1-interacting protein under norflurazon treatment. Protoplasma 258: 371-378. [link] 2020 1. Kong M-J, Huang N, Chen S-M, Liang H-Y, Liu X-Y, Zhuang Z, Lu S*. 2020. The nuclear localization of the DnaJ-like zinc finger domain-containing protein EDA3 affects seed development in Arabidopsis thaliana. International Journal of Molecular Sciences 21: 7979. [link] 2. Deng Y-Y, Wang Q, Cao T-J, Zheng H, Ge Z-H, Yang L-E*, Lu S*. 2020. Cloning and functional characterization of the bona fide geranylgeranyl diphosphate synthase from the red algal seaweed Bangia fuscopurpurea. Algal Research 48: 101935. [link] 3. Deng Y-Y, Cheng L, Wang Q, Ge Z-H, Zheng H, Cao T-J, Lu Q-Q, Yang L-E*, Lu S*. 2020. Functional characterization of lycopene cyclases illustrates the metabolic pathway toward lutein in red algal seaweeds. Journal of Agricultural and Food Chemistry 68: 1354-1363. [link] 4. Cao T-J, Wang L-J, Huang X-Q, Deng Y-Y, Yang L-E*, Lu S*. 2020. Manipulation of Synechocystis sp. PCC 6803 as a platform for functional identification of genes involved in carotenoid metabolism. Plant Biotechnology Journal 18: 605-607. [link] 5. 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